Note that chapter and section numbering do not appear automatically in the MS Word output unless you supply a reference.docx file, as described in the RMarkdown guide and this Stack Overflow question. See relevant settings in this excerpt from index.Rmd: output: Note that number_sections must be true to display Figure and Table numbers in x.x format, which is desired for this book. #GITBOOK EDITOR SUBFOLDER PDF#The number_sections setting is true for the HTML and PDF editions, and given the toc_depth: 2, this means that they will display two-level chapter-section numbering (1.1, 1.2, etc.) in the Table of Contents. For each web page, the unique ID becomes the file name, and is stored in the docs subfolder. The split_by: section setting divides the HTML pages at the second-level header, which creates shorter web pages with reduced scrolling for readers. In the Bookdown index.Rmd for the HTML book output and the PDF output, the toc_depth: 2 setting displays chapter and section headers down to the second level in the Table of Contents. According to Bookdown, the numbering style will appear correctly in HTML and LaTeX/PDF output, but not in Word or ebooks. The default ID for # Topic is Ī special header in this book is the unnumbered header beginning with (APPENDIX), which indicates that all chapters appearing afterwards are appendices. To avoid confusion, you may wish to carefully delete old HTML pages in docs whenever you significantly alter names and build a new version of the book.īookdown assigns a default ID to each header, which can be used for cross-references. When you change the names of chapters/sections, Bookdown builds new HMTL pages based on those new names, but old HMTL pages based on old chapter/section names may still exist in the same subfolder. Additional helper files described further below.The docs folder, which contains the published book products, such as Web edition ( index.html, introduction.html, etc.), the PDF edition ( HandsOnDataViz.pdf), etc.The images folder, where PNG, JPG, and PDF images to display in chapters are located.While Bookdown refers to these as sections, we call them subchapters. Occasionally, we use some subchapters with second-level headers in this format: 01.1-subchapter.Rmd.Chapters with first-level headers in this format: 01-chapter.Rmd.Preface of the book with non-numbered sections: index.Rmd.Here is a simplified outline of the root file structure in the GitHub repo for this book: #GITBOOK EDITOR SUBFOLDER CODE#Only one of us regularly builds the book with Bookdown to avoid code merge conflicts. As co-authors, we are careful to work on different chapters of the book, and to regularly push our commits to the repo. To understand our file structure, see the GitHub repository for this book at. Zotero and Better BibTeX for Notes and Biblio.Style Guide for Hands-On Data Visualization.GitHub Desktop and Atom Editor to Code Efficiently.Create a New Repo and Upload Files on GitHub.Copy, Edit, and Host a Simple Leaflet Map Template.Our Open-Access Web Edition: Why and How.
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